Module naming scheme
All modules available on Viking follow the same general naming structure: `category/name/version[-toolchain][-suffix]` (where [] indicates this parameter is not present in all modules):
category: the (loose) category the software falls under, e.g. `bio`, `chem`, `compiler`, ...name: the name of the softwareversion: the version of the softwaretoolchain: if compiled with a particular toolchain, the name and version of the toolchain used (and automatically loaded)suffix: a handful of modules contain a suffix, which can indicate:- a particular requirement (e.g. needing Python 2.x)
- specific architecture (e.g. x86_64) - not relevant on Viking since all nodes have the same architecture
- different configurations where software supports it, e.g. MPI/non-MPI versions, or using MKL without intel compilers
Although the category, name and version are required for all modules, not all modules will have a toolchain or suffix in the name.
Compatible Toolchains
It is always important that all modules loaded simultaneously were built with compatible toolchains. When considering which modules are compatible:
- ensure that all modules belong to the same "toolchain generation"
- use modules only from one "branch":
- `
foss`: GCCcore, GCC, gompi, foss - `
intel`: GCCcore, iccifort/intel-compilers, iimpi, intel - `
fosscuda`: GCCcore, GCC, gcccuda, gompic, fosscuda
- `
- note that modules built with "
GCCcore" are compatible with all branches - if a module has no
toolchaincomponent in the name, it should be compatible with any other toolchain. This is usually the case for software provided as a pre-compiled, statically-linked binary.
Toolchain compatibility (CPU-only)
The following table indicates the compatibility of the main toolchains used on Viking (red is used for the "foss", blue for "intel" branches):
| Toolchain generation | (sub)toolchain | ||||
|---|---|---|---|---|---|
| minimal compiler | full compiler | compiler + MPI | compiler + numerical libraries | compiler, MPI + numerical libraries | |
| 2022a | GCCcore-11.3.0 | GCC-11.3.0 | gompi-2022a | gfbf-2022a | foss-2022a |
intel-compilers-2022.1.0 | iimpi-2022a | - | intel-2022a | ||
| 2021b | GCCcore-11.2.0 | GCC-11.2.0 | gompi-2021a | - | foss-2021a |
intel-compilers-2021.4.0 | iimpi-2021a | - | intel-2021a | ||
| 2021a | GCCcore-10.3.0 | GCC-10.3.0 | gompi-2021a | - | foss-2021a |
intel-compilers-2021.2.0 | iimpi-2021a | - | intel-2021a | ||
| 2020b | GCCcore-10.2.0 | GCC-10.2.0 | gompi-2020b | - | foss-2020b |
(not installed) | - | - | - | ||
| 2020a | GCCcore-9.3.0 | GCC-9.3.0 | gompi-2020a | - | foss-2020a |
iccifort-2021.1.217 | iimpi-2020a | - | intel-2020a | ||
| 2019b | GCCcore-8.3.0 | GCC-8.3.0 | gompi-2019b | - | foss-2019b |
iccifort-2019.5.281 | iimpi-2019b | - | intel-2019b | ||
| 2019a | GCCcore-8.2.0 | GCC-8.2.0-2.31.1 | gompi-2019a | - | foss-2019a |
iccifort-2019.1.144-GCC-8.2.0-2.31.1 | iimpi-2019a | - | intel-2019a | ||
| 2018b | GCCcore-7.3.0 | GCC-7.3.0-2.30 | gompi-2018b | - | foss-2018b |
iccifort-2018.3.222-GCC-7.3.0-2.30 | iimpi-2018b | - | intel-2018b | ||
Toolchain compatibility (with CUDA)
The following table indicates the compatibility of the main toolchains used on Viking (red is used for the CPU-only "foss", yellow for "foss" with CUDA support, blue for "intel" branches):
Common toolchains by components
For modules built without CUDA support:
| Toolchain | Compiler(s) | MPI library | Numerical libraries | Notes |
|---|---|---|---|---|
| GCC | GCC | |||
| gompi | GCC | OpenMPI | ||
| gfbf | GCC | FFTW3 FlexiBLAS | available from 2022a onwards | |
| foss | GCC | OpenMPI | ScaLAPACK | OpenBLAS via FlexiBLAS from 2021a onwards |
| iccifort / intel-compilers | icc ifort | Intel MPI | renamed to intel-compilers from 2021a onwards due to move to OneAPI | |
| iimpi | icc ifort | Intel MPI | ||
| intel | icc ifort | Intel MPI | Intel MKL |
for modules with CUDA enabled (only relevant for pre-2021a toolchains):
| Toolchain | Compiler(s) | MPI library | Numerical libraries |
|---|---|---|---|
| gcccuda | GCC | ||
| gompic | GCC | OpenMPI | |
| fosscuda | GCC | OpenMPI | ScaLAPACK |
| iccifort | icc ifort | Intel MPI | |
| iimpic | icc ifort | Intel MPI | |
| intelcuda | icc ifort | Intel MPI | Intel MKL |